140
Views
5
CrossRef citations to date
0
Altmetric
Original Articles

Genome comparison and primer design for detection of Tamarillo leaf malformation virus (TaLMV)

, ORCID Icon & ORCID Icon
Pages 713-726 | Received 03 Oct 2016, Accepted 22 Jul 2017, Published online: 04 Sep 2017

References

  • Acosta-Quezada PG, Raigón MD, Riofrío-Cuenca T, García-Martínez MD, Plazas M, Burneo JI, Figueroa JG, Vilanova S, Prohens J. 2015. Diversity for chemical composition in a collection of different varietal types of tree tomato (Solanum betaceum Cav.), an Andean exotic fruit. Food Chem. 169:327–335.10.1016/j.foodchem.2014.07.152
  • Adams MJ, Antoniw JF, Beaudoin F. 2005a. Overview and analysis of the polyprotein cleavage sites in the family Potyviridae. Mol Plant Pathol. 6:471–487.10.1111/mpp.2005.6.issue-4
  • Adams MJ, Antoniw JF, Fauquet CM. 2005b. Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol. 150:459–479.10.1007/s00705-004-0440-6
  • Ayala M, González P, Gutierrez P, Cotes J, Marín M. 2010. [Serological and molecular characterization of potyviruses associated with tamarillo virus disease in Antioquia (Colombia)]. Acta Biol Colomb. 15:143–162. Spanish.
  • Betancourth C, Goye R, Bravo DA. 2003. [Biological characterization of tamarillo (Solanum betaceum Sendt.) virus in the province of Nariño]. Fitopatología Colomb. 27:7–10. Spanish.
  • Biodiversity International [Internet]. 2013. Descriptors for tree tomato (Solanum betaceum Cav.) and wild relatives; [Accessed 2015 Oct 24]. https://www.bioversityinternational.org/e-library/publications/categories/books/
  • Buitrago DA. 2013. [Socioeconomic characterization of tamarillo producers in the province of Boyacá]. In vestigium Ire. 6:55–64. Spanish.
  • Corpoica. 2003. [Technology of the tamarillo crop]. The third technical report of Corpoica Rionegro (Antioquia): Corporación Colombiana de Investigación Agropecuaria. Spanish.
  • Cruz J. 2005. [Virus identification in Solanum betaceum]. [ dissertation]. Bogotá: Universidad Nacional de Colombia. Spanish.
  • Cui X, Wei T, Chowda-Reddy RV, Sun G, Wang A. 2010. The Tobacco etch virus P3 protein forms mobile inclusions via the early secretory pathway and traffics along actin microfilaments. Virology. 397:56–63.10.1016/j.virol.2009.11.015
  • Cuspoca J. 2007. [Detection of viruses in tamarillo (Solanum betaceum) using experimental hosts and PCR]. [ dissertation]. Bogotá: Universidad Nacional de Colombia. Spanish.
  • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792–1797.10.1093/nar/gkh340
  • Enciso-Rodríguez F, Martínez R, Lobo M, Barrero LS. 2010. Genetic variation in the Solanaceae fruit bearing species lulo and tree tomato revealed by Conserved Ortholog (COSII) markers. Genet Mol Biol. 33:271–278.10.1590/S1415-47572010005000016
  • Eskelin K, Hafrén A, Rantalainen KI, Mäkinen K. 2011. Potyviral VPg enhances Viral RNA translation and inhibits reporter mRNA translation In planta. J Virol. 85:9210–9221.10.1128/JVI.00052-11
  • Fernández A, Guo HS, Sáenz P, Simón-Buela L, Gómez de Cedrón M, García JA. 1997. The motif V of plum pox potyvirus CI RNA helicase is involved in NTP hydrolysis and is essential for virus RNA replication. Nucleic Acids Res. 25:4474–4480.10.1093/nar/25.22.4474
  • Gallo-García Y, Marín-Montoya M, Gutiérrez PA. 2011. [Obtention of specific antibodies for detection of Tamarillo leaf malformation virus (TaLMV) in tamarillo]. Acta Biol Colomb. 16:135–148. Spanish.
  • Gil JF, Ayala ML, Marín M, González P. 2009. [Serological identification of potyviruses in tamarillo crops (Solanum betaceum cav.) in Antioquia]. Rev Politécnica. 5:112–120. Spanish.
  • Gish W, States DJ. 1993. Identification of protein coding regions by database similarity search. Nat Genet. 3:266–272.10.1038/ng0393-266
  • Guruprasad K, Reddy BVB, Pandit MW. 1990. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Eng. 4:155–161.10.1093/protein/4.2.155
  • Gutiérrez PA, Alzate JF, Marín-Montoya M. 2014. Genome sequence of a virus isolate from tamarillo (Solanum betaceum) in Colombia: evidence for a new potyvirus. Arch Virol. 160:557–560.
  • Haikonen T, Rajamäki ML, Tian YP, Valkonen JP. 2013. Mutation of a short variable region in HCpro protein of Potato virus A affects interactions with a microtubule-associated protein and induces necrotic responses in tobacco. Mol Plant Microbe Interact. 26:721–733.10.1094/MPMI-01-13-0024-R
  • ICTV [Internet]. 2016. Taxonomy; [Accessed 2016 Jun 20]. Available from: https://www.ictvonline.org/
  • Jaramillo M, Gutierrez P, Lagos LE, Cotes JM, Marin M. 2011. Detection of a complex of viruses in tamarillo (Solanum betaceum) orchards in the Andean region of Colombia. Trop Plant Pathol. 36:150–159.
  • Kahn RP, Bartels R. 1968. The Colombian datura virus – a new virus in the Potato virus Y group. Phytopathology. 58:587–592.
  • Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics. 26:589–595.10.1093/bioinformatics/btp698
  • Li XH, Valdez P, Olvera RE, Carrington JC. 1997. Functions of the Tobacco etch virus RNA polymerase (NIb): subcellular transport and protein-protein interaction with VPg/proteinase (NIa). J Virol. 71:1598–1607.
  • López-Moya JJ, Wang RY, Pirone TP. 1999. Context of the coat protein DAG motif affects potyvirus transmissibility by aphids. J Gen Virol. 80:3281–3288.10.1099/0022-1317-80-12-3281
  • Mejía DM, Rodas EI, Patiño LF, Gonzalez EP. 2009. [Effect of Acibenzolar-S-methyl on the evolution of the virus disease of tamarillo]. Agron Colomb. 27:87–93. Spanish.
  • Olspert A, Chung BY, Atkins JF, Carr JP, Firth AE. 2015. Transcriptional slippage in the positive-sense RNA virus family Potyviridae. EMBO Rep. 16:995–1004.10.15252/embr.201540509
  • Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics. 14:817–818.10.1093/bioinformatics/14.9.817
  • Prohens J, Nuez F. 2001. The tamarillo (Cyphomandra betacea). Small Fruits Rev. 1:43–68.10.1300/J301v01n02_06
  • Rajamäki ML, Valkonen JP. 2009. Control of nuclear and nucleolar localization of nuclear inclusion protein a of Picorna-line Potato virus A in Nicotiana species. Plant Cell. 21:2485–2502.10.1105/tpc.108.064147
  • Repo de Carrasco R, Encina C. 2008. Determination of antioxidant capacity and bioactive compounds in native Peruvian fruits. Bol Soc Quim Peru. 74:108–124.
  • Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ. 2005. A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proc Natl Acad Sci USA. 102:14694–14699.10.1073/pnas.0507400102
  • Tamayo PJ. 1996. [Viral diseases of tamarillo (Cyphomandra betacea (Cav. Sendt.) in Colombia]. ASCOLFI Informa. 22:26–29. Spanish.
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30:2725–2729.10.1093/molbev/mst197
  • Valli A, Gallo A, Calvo M, de Jesús Pérez J, García JA. 2014. A novel role of the potyviral helper component proteinase contributes to enhance the yield of viral particles. J Virol. 88:9808–9818.10.1128/JVI.01010-14
  • Wetzel T, Candresse T, Macquaire G, Ravelonandro M, Dunez J. 1992. A highly sensitive immunocapture polymerase chain reaction method for plum pox potyvirus detection. J Virol Methods. 39:27–37.10.1016/0166-0934(92)90122-T
  • Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S, Madden TL. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics. 13:134.10.1186/1471-2105-13-134

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.